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SmartTable-or-Enriched-IDs-Converter

Fast and lightweight windows x86 gui app that converts in place a file with identifiers derived from metacyc/biocyc/plantcyc/KEGG/kobas/plant metgenmap into a 1-column txt file

Dependencies

  1. Windows 11 or 10 version 16215.0 or higher(type winver on the search button and click winver to find your OS version)
  2. Windows Subsystem for linux(wsl1)
  3. the file in the bin folder

if you want a windows only software look up the nowsl branch

if you want instead to run it via docker go to the docker branch

Usage

  1. Go to metacyc/plantcyc/biocyc etc and select an organism and a pathway
  2. create a SmartTable by clicking Add to SmartTable and selecting New SmartTable
  3. in the Add Transform column select Genes of pathway
  4. Click the 1st row and select delete, then click Export -> to Spreadsheet File
  5. Open SmartTable IDs Converter.exe and click Browse to select an input file
  6. Click Run program to convert the file in place

Example input/output files can be found in the data/ folder Input data were derived from TomatoCyc v4.0
Note: Input file can either contain Genes of pathway in the 1st row or if the ids are derived from SmartTable enrichment analysis, it should contain only the identifiers