relecov-platform/docker-compose.test.yml at develop · BU-ISCIII/relecov-platform · GitHub

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version: "3.8"

services:
  db:
    image: docker.io/library/mysql:8.0
    container_name: relecov_test_db
    command: --default-authentication-plugin=mysql_native_password
    restart: unless-stopped
    environment:
      MYSQL_DATABASE: iskylims_docker
      MYSQL_USER: django
      MYSQL_PASSWORD: djangopass
      MYSQL_ROOT_PASSWORD: root
    healthcheck:
      test: ["CMD-SHELL", "mysqladmin ping -h 127.0.0.1 --user=django --password=djangopass --silent"]
      interval: 5s
      retries: 15
      start_period: 30s
      timeout: 3s
    ports:
      - "6606:3306"
    volumes:
      - relecov_test_db_data:/var/lib/mysql
      - ./tests/sql/init-test.sql:/docker-entrypoint-initdb.d/init-test.sql:ro
      - /etc/localtime:/etc/localtime:ro
      - /usr/share/zoneinfo:/usr/share/zoneinfo:ro
    networks:
      - relecov_test_net

  iskylims_app:
    build:
      context: ../relecov-iskylims
      args:
        INSTALL_TYPE: ${ISKYLIMS_INSTALL_TYPE:-dep}
        GIT_REVISION: ${ISKYLIMS_GIT_REVISION:-main}
        INSTALL_CONF: ${ISKYLIMS_INSTALL_CONF:-conf/docker_test_settings.txt}
        APP_UID: ${APP_UID:-1212}
        APP_GID: ${APP_GID:-1212}
    container_name: relecov_test_iskylims_app
    restart: unless-stopped
    environment:
      APP_MODE: dev
      APP_PORT: 8001
    depends_on:
      db:
        condition: service_healthy
    ports:
      - "8001:8001"
    volumes:
      - /etc/localtime:/etc/localtime:ro
      - /usr/share/zoneinfo:/usr/share/zoneinfo:ro
    networks:
      relecov_test_net:
        aliases:
          - relecov-lims
          - iskylimsapp

  app:
    build:
      context: .
      args:
        INSTALL_TYPE: ${INSTALL_TYPE:-dep}
        GIT_REVISION: ${GIT_REVISION:-main}
        INSTALL_CONF: ${INSTALL_CONF:-conf/docker_test_settings.txt}
        APP_UID: ${APP_UID:-1212}
        APP_GID: ${APP_GID:-1212}
    container_name: relecov_test_app
    restart: unless-stopped
    environment:
      APP_MODE: dev
      APP_PORT: 8000
    depends_on:
      db:
        condition: service_healthy
      iskylims_app:
        condition: service_started
    ports:
      - "8000:8000"
    volumes:
      - relecov_test_logs:/opt/relecov-platform/logs
      - relecov_test_documents:/opt/relecov-platform/documents
      - relecov_test_static:/opt/relecov-platform/static
      - /etc/localtime:/etc/localtime:ro
      - /usr/share/zoneinfo:/usr/share/zoneinfo:ro
    extra_hosts:
      - "host.docker.internal:host-gateway"
    networks:
      - relecov_test_net

  nextstrain:
    image: docker.io/nextstrain/base:latest
    container_name: relecov_test_nextstrain
    restart: unless-stopped
    command: ["nextstrain", "view", "/data", "--port", "8100", "--host", "0.0.0.0"]
    volumes:
      - relecov_test_nextstrain_data:/data
      - /etc/localtime:/etc/localtime:ro
      - /usr/share/zoneinfo:/usr/share/zoneinfo:ro
    ports:
      - "8100:8100"
    networks:
      - relecov_test_net

networks:
  relecov_test_net:

volumes:
  relecov_test_db_data:
  relecov_test_logs:
  relecov_test_documents:
  relecov_test_static:
  relecov_test_nextstrain_data: