From 57abafedeecae1e45989b485e4929d15d90cbcb2 Mon Sep 17 00:00:00 2001
From: Sven Baars <s.baars@uu.nl>
Date: Thu, 27 Feb 2025 11:54:59 +0100
Subject: [PATCH 1/3] CI: Sync the CI script with TransiFlow.

---
 .github/workflows/ci.yml | 36 +++++++++++-------------------------
 1 file changed, 11 insertions(+), 25 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 2cd8592..6a921dc 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -1,4 +1,4 @@
-name: Python application
+name: Run tests
 
 on:
   push:
@@ -10,39 +10,25 @@ jobs:
   build:
     strategy:
       matrix:
-        include:
-          - os: 'ubuntu-latest'
-            dependencies: ''
-          - os: 'macos-latest'
-            dependencies: ''
-#          - os: 'macos-latest'
-#            dependencies: 'nlesc/nlesc/trilinos'
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: [3.8, 3.x]
 
     runs-on: ${{ matrix.os }}
 
     steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v2
+    - uses: actions/checkout@v3
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
       with:
-        python-version: 3.9
+        python-version: ${{ matrix.python-version }}
+        cache: 'pip'
 
     - name: Install python dependencies
       run: |
         python -m pip install --upgrade pip
         pip install flake8 pytest
-        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
-
-    - name: Install Linux dependencies
-      run: |
-        sudo apt-get install ${{ matrix.dependencies }}
-      if: ${{ matrix.os != 'macos-latest' && matrix.dependencies != '' }}
-
-    - name: Install macOS dependencies
-      run: |
-        brew tap nlesc/nlesc
-        brew install ${{ matrix.dependencies }}
-      if: ${{ matrix.os == 'macos-latest' && matrix.dependencies != '' }}
+        pip install -r requirements.txt
 
     - name: Lint with flake8
       run: |
@@ -50,4 +36,4 @@ jobs:
 
     - name: Test with pytest
       run: |
-        pytest tests
+        pytest -v -o console_output_style=classic tests

From ecc01b793b5e781ffaed51fe7240c25acd6cd6fd Mon Sep 17 00:00:00 2001
From: Sven Baars <s.baars@uu.nl>
Date: Thu, 27 Feb 2025 11:56:23 +0100
Subject: [PATCH 2/3] CI: Add continuous deployment workflow for PyPI
 publication.

---
 .github/workflows/cd.yml | 57 ++++++++++++++++++++++++++++++++++++++++
 .github/workflows/ci.yml |  1 +
 2 files changed, 58 insertions(+)
 create mode 100644 .github/workflows/cd.yml

diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml
new file mode 100644
index 0000000..7d8c059
--- /dev/null
+++ b/.github/workflows/cd.yml
@@ -0,0 +1,57 @@
+name: Publish to PyPI
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  run-tests:
+    name: Run tests to avoid a broken release
+    uses: BIMAU/jadapy/.github/workflows/ci.yml@master
+
+  build:
+    name: Build packages
+    runs-on: ubuntu-latest
+    needs:
+      - run-tests
+
+    steps:
+    - name: Set up Python 3.x
+      uses: actions/setup-python@v4
+      with:
+        python-version: '>=3.8,<4'
+
+    - name: Check out the source code
+      uses: actions/checkout@v3
+
+    - name: Build a source package and a wheel
+      run: python -m build .
+
+    - name: Upload packages as artifact
+      uses: actions/upload-artifact@v4
+      with:
+        name: packages-for-pypi
+        path: dist/
+
+  publish:
+    name: Publish to PyPI
+    runs-on: ubuntu-latest
+    needs:
+      - build
+
+    environment:
+      name: pypi
+      url: https://pypi.org/p/jadapy
+
+    permissions:
+      id-token: write
+
+    steps:
+      - name: Download artifact with packages
+        uses: actions/download-artifact@v4
+        with:
+          name: packages-for-pypi
+          path: dist/
+
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 6a921dc..6d1abbb 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -5,6 +5,7 @@ on:
     branches: [ master ]
   pull_request:
     branches: [ master ]
+  workflow_call:
 
 jobs:
   build:

From 9761cf7bcc54a943de28f3398ea5e29bcd0eac05 Mon Sep 17 00:00:00 2001
From: Sven Baars <s.baars@uu.nl>
Date: Thu, 27 Feb 2025 11:58:54 +0100
Subject: [PATCH 3/3] Release v1.0.0.

---
 setup.cfg | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/setup.cfg b/setup.cfg
index 19c8b64..a6ab8f2 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = jadapy
-version = 0.0.0
+version = 1.0.0
 url = https://github.com/BIMAU/jadapy
 license = Apache License 2.0
 author = Sven Baars
@@ -9,7 +9,7 @@ description = Implementations of JDQR and JDQZ with optional integration with Tr
 long_description = file: README.md
 long_description_content_type = text/markdown
 classifiers =
-    Development Status :: 3 - Alpha
+    Development Status :: 5 - Production/Stable
     Environment :: Console
     Intended Audience :: Developers
     Intended Audience :: Science/Research
@@ -40,4 +40,4 @@ norecursedirs = lib
 ignore = E226,E261,E302,E731,C901,W503
 max-line-length = 127
 max-complexity = 10
-exclude = lib
\ No newline at end of file
+exclude = lib