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"submitter_id": "lipidomics-assay-ausdiab-12-221-990940238_e91aef83bc5a85c37d2c8ddbb289de3ffc863bbb3489c650b3a10f13f1477895",
"type": "lipidomics_assay",
"assay_id": "AD12_250#12-221-990940238",
"assay_description": "Targeted mass spec lipidome",
"instrument_type": "Agilent QQQ LC-MS",
"samples": [
{
"submitter_id": "sample-ausdiab-0441301_e91aef83bc5a85c37d2c8ddbb289de3ffc863bbb3489c650b3a10f13f1477895"
}
]
}
Should catch instrument_type error using acdc schema 1.0.0
error should look like "'Agilent QQQ LC-MS' is not one of ['LC-MS', 'MS/MS', 'Multidimensional MS', 'Ion Mobility MS', 'MALDI MS', 'GC-MS', 'High Mass Accuracy MS', None]"
For some reason it misses it. There is mention in the logs that foreign key could not be found, maybe because the samples data type is misaligned with the code. Check to see how foreign key is detected, and see if the foreign key is the wrong data type whether it skips the validation for that data file e.g. lipidomics_assay.json or for that object
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