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runBNG de novo issue when using a reference cmap #39

@marialui

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@marialui

error.txt
Hi, thank you for this useful tool! i'm having troubles with the execution of the de novo commands. i'm using a reference cmap togheter with the molecules.bnx, but it seems it requires the name of the reference. i don't see a flag to specify the name. can you help me? thanks in advance

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