convertVCF2GDS/dxapp.json at master · AnalysisCommons/convertVCF2GDS · GitHub

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{
  "name": "convertVCF2GDS_v3",
  "title": "convertVCF2GDS",
  "summary": "Uses the R SeqArray package to convert a VCF file into GDS format.",
  "tags": [
    "Statistics"
  ],
  "dxapi": "1.0.0",
  "inputSpec": [
    {
      "name": "vcf_filename",
      "label": "Required",
      "class": "array:file",
      "optional": false
    },
    {
      "name": "file_basename",
      "class": "string",
      "optional": false
    }
  ],
  "outputSpec": [
    {
      "name": "results",
      "class": "file"
    }
  ],
  "runSpec": {
    "execDepends": [
      {
        "name": "libxml2-dev"
      }
    ],
    "systemRequirementsByRegion": {
      "aws:us-east-1": {
        "main": {
          "instanceType": "mem1_ssd1_x8"
        }
      }
    },
    "systemRequirements": {
      "main": {
        "instanceType": "mem1_ssd1_x8"
      }
    },
    "file": "src/code.sh",
    "release": "14.04",
    "interpreter": "bash",
    "distribution": "Ubuntu"
  },
  "access": {
    "project": "CONTRIBUTE",
    "allProjects": "CONTRIBUTE",
    "network": [
      "*"
    ]
  }
}