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Command-line script for BioQC #32

@grst

Description

@grst

For integrating BioQC in automated workflows (such as nfcore/rnaseq) it would be really helpful to have a CLI to BioQC.
Essentially, the script should take

  • a gene expression matrix
  • optionally, a GMT file, or just use BioQC's default if none is specified
  • optionally, a species identifier to automatically remap to orthologous gene symbols (maybe even autodetect that for rat and mouse)

and produce

  • A heatmap with all signatures that are detected in at least one sample
  • A CSV/TSV file with all signature scores

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