VCF files

[lfalquet]

Hi Wai,

All generated VCF files should be compatible with the VCF format 4.1.
In addition I would also filter out all the calls that are below 20bp since they create a lot of noise in the merged VCF and they are beyond our scope of large structural variants.

Cheers
Laurent

[wyleung]

List of candidates for change:

SVdetect - vcf writer
Breakdancer - vcf writer