PartSeg/.github/workflows/base_test_workflow.yml at develop · 4DNucleome/PartSeg · GitHub

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name: Base Test Workflow

on:
  workflow_call:
    inputs:
      python_version:
        required: true
        type: string
      os:
        required: false
        type: string
        default: "ubuntu-24.04"
      tox_args:
        required: false
        type: string
        default: ""
      pytest_args:
        required: false
        type: string
        default: ""
      napari:
        required: false
        type: string
        default: "latest"
      qt_backend:
        required: false
        type: string
        default: "PyQt5"
      test_data:
        required: false
        type: boolean
        default: False
      coverage:
        required: false
        type: boolean
        default: False
      timeout:
        required: false
        type: number
        default: 60
      pydantic:
        required: false
        type: string
        default: ""
      artifact_suffix:
        required: false
        type: string
        default: ""


jobs:
  test:
    name: ${{ inputs.os }} py ${{ inputs.python_version }} ${{ inputs.napari }} ${{ inputs.qt_backend }} ${{ inputs.pydantic }}
    runs-on: ${{ inputs.os }}
    env:
      NAPARI: ${{ inputs.napari }}
      BACKEND: ${{ inputs.qt_backend }}
      PYVISTA_OFF_SCREEN: True  # required for opengl on windows
      TOX_ARGS: ${{ inputs.tox_args }}
      PYTEST_ARGS: ${{ inputs.pytest_args }}
    steps:
      - uses: actions/checkout@v6
      - uses: actions/setup-python@v6
        name: Install Python ${{ inputs.python_version }}
        with:
          python-version: ${{ inputs.python_version }}
          cache: 'pip'
          cache-dependency-path: 'pyproject.toml'

      - name: Setup headless display
        uses: pyvista/setup-headless-display-action@5bc8de3bc71fcda7a96439571287a554901541a0 # v4.3
        with:
          qt: true
          wm: herbstluftwm

      - name: Download test data
        if: ${{ inputs.test_data }}
        uses: actions/download-artifact@v8
        with:
          name: test_data
          path: test_data

      - name: Install dependencies
        run: |
          python -m pip install -r requirements/requirements_dev.txt tox-gh-actions>=2.12.0 tox-min-req tox-uv
          pip list

      - name: Test with tox PartSegImage
        if: ${{ inputs.napari == 'latest' }}
        shell: bash
        run: |
          # shellcheck disable=SC2086
          python -m tox $TOX_ARGS -- package/tests/test_PartSegImage $PYTEST_ARGS
        env:
          PIP_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}
          UV_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}

      - name: Test with tox PartSegCore
        if: ${{ inputs.napari == 'latest' }}
        shell: bash
        run: |
          # shellcheck disable=SC2086
          python -m tox $TOX_ARGS --  package/tests/test_PartSegCore $PYTEST_ARGS
        env:
          PIP_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}
          UV_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}

      - name: Test with tox PartSeg
        if: ${{ inputs.napari == 'latest' }}
        timeout-minutes: ${{ inputs.timeout }}
        shell: bash
        run: |
          # shellcheck disable=SC2086
          python -m tox $TOX_ARGS -- package/tests/test_PartSeg $PYTEST_ARGS
        env:
          PIP_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}
          UV_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}

      - name: Test with tox all
        if: ${{ inputs.napari != 'latest' }}
        timeout-minutes: ${{ inputs.timeout }}
        shell: bash
        run: |
          # shellcheck disable=SC2086
          python -m tox $TOX_ARGS ${PYTEST_ARGS:+-- $PYTEST_ARGS}
        env:
          PIP_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}
          UV_CONSTRAINT: ${{ inputs.napari == 'latest' && format('requirements/constraints_py{0}{1}.txt', inputs.python_version, inputs.pydantic ) || 'requirements/version_denylist.txt' }}


      - uses: actions/upload-artifact@v7
        with:
          name: timing-report-${{ inputs.os }}-py-${{ inputs.python_version }}-${{ inputs.napari }}-${{ inputs.qt_backend }}-${{ inputs.coverage }}${{ inputs.artifact_suffix }}
          path: |
            ./report-*.json
          retention-days: 7

      - name: Upload coverage data
        uses: actions/upload-artifact@v7
        if: ${{ inputs.coverage }}
        with:
          name: cov-reports-${{ inputs.os }}-py-${{ inputs.python_version }}-${{ inputs.napari }}-${{ inputs.qt_backend }}${{ inputs.artifact_suffix }}
          include-hidden-files: 'true'
          path: |
            ./.coverage.*