-
Notifications
You must be signed in to change notification settings - Fork 14
Description
Describe the bug
I had an sf object which I passed into the fdmr::mesh_builder() function, but I got the following error when the shiny app was loading:
test <- df |>
sf::st_as_sf() |>
sf::st_transform(sf::st_crs("+proj=longlat +datum=WGS84"))fdmr::mesh_builder(
spatial_data = test,
x_coord = "long",
y_coord = "lat"
)
Warning in value[3L] :
Unable to read CRS from data, using default CRS = '+proj=longlat +datum=WGS84'Listening on http://127.0.0.1:4044
Warning: Error in sf::st_sfc: use st_as_sfc() to extract geometries from an sf object
178: stop
177: sf::st_sfc
174: fm_unify_coords.sf
172: fmesher::fm_mesh_2d_inla
171: eventReactiveValueFunc
127: mesh
119:
103: mesh_spatial
98: ::
htmlwidgets
shinyRenderWidget
97: func
84: renderFunc
83: output$map
2: shiny::runApp
1: fdmr::mesh_builder
Expected behavior
I expected the shiny app to load my sf object with the expected mesh builder options
To Reproduce
See above
User Environment (please complete the following information):
─ Session info ──────────────────────────────────────────────────────────────
setting value
version R version 4.3.3 (2024-02-29 ucrt)
os Windows 10 x64 (build 19045)
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United Kingdom.utf8
ctype English_United Kingdom.utf8
tz Europe/London
date 2024-03-26
rstudio 2023.12.1+402 Ocean Storm (desktop)
pandoc 3.1.1 @ C:/Users/Sebastian.Fox/AppData/Local/Programs/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
─ Packages ──────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.3.1)
bslib 0.6.2 2024-03-22 [1] CRAN (R 4.3.3)
cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.3)
class 7.3-22 2023-05-03 [1] CRAN (R 4.3.3)
classInt 0.4-10 2023-09-05 [1] CRAN (R 4.3.3)
cli 3.6.2 2023-12-11 [1] CRAN (R 4.3.3)
codetools 0.2-19 2023-02-01 [1] CRAN (R 4.3.3)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.3)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.3.3)
crosstalk 1.2.1 2023-11-23 [1] CRAN (R 4.3.3)
curl 5.2.1 2024-03-01 [1] CRAN (R 4.3.3)
DBI 1.2.2 2024-02-16 [1] CRAN (R 4.3.3)
devtools 2.4.5 2022-10-11 [1] CRAN (R 4.3.3)
digest 0.6.35 2024-03-11 [1] CRAN (R 4.3.3)
dplyr * 1.1.4 2023-11-17 [1] CRAN (R 4.3.3)
e1071 1.7-14 2023-12-06 [1] CRAN (R 4.3.3)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.3)
evaluate 0.23 2023-11-01 [1] CRAN (R 4.3.3)
fansi 1.0.6 2023-12-08 [1] CRAN (R 4.3.3)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.3)
fdmr * 0.2.0 2024-03-25 [1] Github (4DModeller/fdmr@6afa86c)
fmesher 0.1.5 2023-12-20 [1] CRAN (R 4.3.3)
fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.3)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.3)
ggplot2 3.5.0 2024-02-23 [1] CRAN (R 4.3.3)
glue 1.7.0 2024-01-09 [1] CRAN (R 4.3.3)
gridExtra 2.3 2017-09-09 [1] CRAN (R 4.3.3)
gtable 0.3.4 2023-08-21 [1] CRAN (R 4.3.3)
htmltools 0.5.7 2023-11-03 [1] CRAN (R 4.3.3)
htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.3.3)
httpuv 1.6.14 2024-01-26 [1] CRAN (R 4.3.3)
INLA 24.02.09 2024-02-09 [1] local
jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.3.3)
jsonlite 1.8.8 2023-12-04 [1] CRAN (R 4.3.3)
KernSmooth 2.23-22 2023-07-10 [1] CRAN (R 4.3.3)
knitr 1.45 2023-10-30 [1] CRAN (R 4.3.3)
later 1.3.2 2023-12-06 [1] CRAN (R 4.3.3)
lattice 0.22-5 2023-10-24 [1] CRAN (R 4.3.3)
leafem 0.2.3 2023-09-17 [1] CRAN (R 4.3.3)
leaflet 2.2.1 2023-11-13 [1] CRAN (R 4.3.3)
leaflet.providers 2.0.0 2023-10-17 [1] CRAN (R 4.3.3)
lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.3.3)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.3)
mapview 2.11.2 2023-10-13 [1] CRAN (R 4.3.3)
Matrix 1.6-5 2024-01-11 [1] CRAN (R 4.3.3)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.3.3)
mime 0.12 2021-09-28 [1] CRAN (R 4.3.1)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.3.3)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.3)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.3)
pkgbuild 1.4.4 2024-03-17 [1] CRAN (R 4.3.3)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.3)
pkgload 1.3.4 2024-01-16 [1] CRAN (R 4.3.3)
png 0.1-8 2022-11-29 [1] CRAN (R 4.3.1)
profvis 0.3.8 2023-05-02 [1] CRAN (R 4.3.3)
promises 1.2.1 2023-08-10 [1] CRAN (R 4.3.3)
proxy 0.4-27 2022-06-09 [1] CRAN (R 4.3.3)
purrr 1.0.2 2023-08-10 [1] CRAN (R 4.3.3)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.3)
raster 3.6-26 2023-10-14 [1] CRAN (R 4.3.3)
RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.3.1)
Rcpp 1.0.12 2024-01-09 [1] CRAN (R 4.3.3)
remotes 2.5.0 2024-03-17 [1] CRAN (R 4.3.3)
rlang 1.1.3 2024-01-10 [1] CRAN (R 4.3.3)
rmarkdown 2.26 2024-03-05 [1] CRAN (R 4.3.3)
rstudioapi 0.16.0 2024-03-24 [1] CRAN (R 4.3.3)
sass 0.4.9 2024-03-15 [1] CRAN (R 4.3.3)
satellite 1.0.5 2024-02-10 [1] CRAN (R 4.3.3)
scales 1.3.0 2023-11-28 [1] CRAN (R 4.3.3)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.3)
sf 1.0-16 2024-03-24 [1] CRAN (R 4.3.3)
shiny * 1.8.0 2023-11-17 [1] CRAN (R 4.3.3)
shinybusy 0.3.3 2024-03-09 [1] CRAN (R 4.3.3)
shinyjs 2.1.0 2021-12-23 [1] CRAN (R 4.3.3)
sp 2.1-3 2024-01-30 [1] CRAN (R 4.3.3)
stringi 1.8.3 2023-12-11 [1] CRAN (R 4.3.2)
stringr 1.5.1 2023-11-14 [1] CRAN (R 4.3.3)
terra 1.7-71 2024-01-31 [1] CRAN (R 4.3.3)
tibble 3.2.1 2023-03-20 [1] CRAN (R 4.3.3)
tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.3.3)
units 0.8-5 2023-11-28 [1] CRAN (R 4.3.3)
urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.3.3)
usethis 2.2.3 2024-02-19 [1] CRAN (R 4.3.3)
utf8 1.2.4 2023-10-22 [1] CRAN (R 4.3.3)
vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.3.3)
withr 3.0.0 2024-01-16 [1] CRAN (R 4.3.3)
xfun 0.43 2024-03-25 [1] CRAN (R 4.3.3)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.3)
yaml 2.3.8 2023-12-11 [1] CRAN (R 4.3.2)